Illumina MiSeq paired end sequencing of SAMD00113702 - SRA

DRX119887: Illumina MiSeq paired end sequencing of SAMD00113702
1 ILLUMINA (Illumina MiSeq) run: 26,062 spots, 15.6M bases, 8.6Mb downloads

Submitted by: Tokyo Univetsity of Agriculture (TUAGRI)

Study: Diversity and antimicrobial activity relationship of Japanese quail cathelicidin.

PRJDB6799 • DRP011205 • All experiments • All runs

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The Japanese quail has several advantages as a low-fat meat bird with high immunity against diseases. Cathelicidins (CATHs) are host defense peptides with conservation across a vertebrate species and play an important role in innate immunity. Furthermore, the funcrion of host defense peptides are altered by amino acid substitutions. Then, we studied the diversity of cathelicidin genes in avian and detected SNPs in all CATH genes.

Sample: Coturnix japonica is Y (yellow) strain No.2 and targeted CATH3 gene.

SAMD00113702 • DRS365008 • All experiments • All runs

Organism: Coturnix japonica

Library:

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: GENOMIC

Selection: PCR

Layout: PAIRED

Construction protocol:

Spot descriptor:

1 forward303 reverse

Runs: 1 run, 26,062 spots, 15.6M bases, 8.6Mb

Run	# of Spots	# of Bases	Size	Published
DRR127143	26,062	15.6M	8.6Mb	2024-02-21

ID:: 31969185

SRA

Sequence Read Archive

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